Shakhnovich, Eugene I: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

Don't use scam websites

1

The Folding Mechanics of a Knotted Protein

Stefan Wallin, Konstantin B. Zeldovich, Eugene I. Shakhnovich

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.22 MB

english, 2007

2

Protein and DNA Sequence Determinants of Thermophilic Adaptation

Zeldovich, Konstantin B., Berezovsky, Igor N., Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 509 KB

english, 2007

3

Comparison of two optimization methods to derive energy parameters for protein folding: Perceptron and Z score

Michele Vendruscolo, Leonid A. Mirny, Eugene I. Shakhnovich, Eytan Domany

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 222 KB

english, 2000

4

FOG: Fragment Optimized Growth Algorithm for the de Novo Generation of Molecules Occupying Druglike Chemical Space

Kutchukian, Peter S., Lou, David, Shakhnovich, Eugene I.

Journal:

Journal of Chemical Information and Modeling

Year:

2009

Language:

english

File:

PDF, 2.28 MB

english, 2009

5

Evolutionary dynamics of adult stem cells: Comparison of random and immortal-strand segregation mechanisms

Tannenbaum, Emmanuel, Sherley, James L., Shakhnovich, Eugene I.

Journal:

Physical Review E

Year:

2005

Language:

english

File:

PDF, 191 KB

english, 2005

6

Slowly Replicating Lytic Viruses: Pseudolysogenic Persistence and Within-Host Competition

Zhang, Jingshan, Shakhnovich, Eugene I.

Journal:

Physical Review Letters

Year:

2009

Language:

english

File:

PDF, 133 KB

english, 2009

7

Repurposing of rutin for the inhibition of norovirus replication

Chéron, Nicolas, Yu, Chenchen, Kolawole, Abimbola O., Shakhnovich, Eugene I., Wobus, Christiane E.

Journal:

Archives of Virology

Year:

2015

Language:

english

File:

PDF, 531 KB

english, 2015

8

Searching the sequence space for potent aptamers using SELEX in silico

Zhou, Qingtong, Xia, Xiaole, Luo, Zhaofeng, Liang, Haojun, Shakhnovich, Eugene

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 6.93 MB

english, 2015

9

Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models

Jacquin, Hugo, Gilson, Amy, Shakhnovich, Eugene, Cocco, Simona, Monasson, Rémi, Marks, Debora S.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.19 MB

english, 2016

10

All-atom simulation of the HET-s prion replication

Terruzzi, Luca, Spagnolli, Giovanni, Boldrini, Alberto, Requena, JesÃºs R., Biasini, Emiliano, Faccioli, Pietro, Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 6.41 MB

2020

11

Factors that affect the folding ability of proteins

Aaron R. Dinner, Victor Abkevich, Eugene Shakhnovich, Martin Karplus

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 106 KB

english, 1999

12

ChemInform Abstract: From Knowledge-Based Potentials to Combinatorial Lead Design in Silico

Bartosz A. Grzybowski, Alexey V. Ishchenko, Jun Shimada, Eugene I. Shakhnovich

Journal:

Year:

2002

File:

PDF, 25 KB

2002

13

Genetic instability and the quasispecies model

Yisroel Brumer, Franziska Michor, Eugene I. Shakhnovich

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 274 KB

english, 2006

14

Semiconservative quasispecies equations for polysomic genomes: The haploid case

Emmanuel Tannenbaum, James L. Sherley, Eugene I. Shakhnovich

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 373 KB

english, 2006

15

Semiconservative replication, genetic repair, and many-gened genomes: Extending the quasispecies paradigm to living systems

Emmanuel Tannenbaum, Eugene I. Shakhnovich

Journal:

Physics of Life Reviews

Year:

2005

Language:

english

File:

PDF, 1.08 MB

english, 2005

16

Recognition between random heteropolymers and multifunctional disordered surfaces

D Bratko, Arup K Chakraborty, Eugene I Shakhnovich

Journal:

Chemical Physics Letters

Year:

1997

Language:

english

File:

PDF, 186 KB

english, 1997

17

Disordered heteropolymers with cross-links – phase diagram and conformational transitions

Lorin Gutman, Eugene Shakhnovich

Journal:

Chemical Physics Letters

Year:

1999

Language:

english

File:

PDF, 589 KB

english, 1999

18

Understanding conserved amino acids in proteins

Nikolay V. Dokholyan, Leonid A. Mirny, Eugene I. Shakhnovich

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2002

Language:

english

File:

PDF, 121 KB

english, 2002

19

Folding thermodynamics and kinetics in all-atom simulations

Eugene Shakhnovich, Edo Kussell, Jun Shimada

Journal:

Journal of Molecular Graphics and Modelling

Year:

2000

Language:

english

File:

PDF, 121 KB

english, 2000

20

Non-native interactions play an effective role in protein folding dynamics

Patrícia F. N. Faísca, Ana Nunes, Rui D.M. Travasso, Eugene I. Shakhnovich

Journal:

Protein Science

Year:

2010

Language:

english

File:

PDF, 2.89 MB

english, 2010

21

Fold recognition with minimal gaps

William Chen, Leonid Mirny, Eugene I. Shakhnovich

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 278 KB

english, 2003

22

Side-chain dynamics and protein folding

Edo Kussell, Jun Shimada, Eugene I. Shakhnovich

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 793 KB

english, 2003

23

Description of atomic burials in compact globular proteins by Fermi-Dirac probability distributions

Antonio L. C. Gomes, Júlia R. de Rezende, Antônio F. Pereira de Araújo, Eugene I. Shakhnovich

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.14 MB

english, 2007

24

A knowledge-based move set for protein folding

William W. Chen, Jae Shick Yang, Eugene I. Shakhnovich

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 572 KB

english, 2007

25

Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins

Antônio F. Pereira de Araújo, Antonio L. C. Gomes, Alexandre A. Bursztyn, Eugene I. Shakhnovich

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 490 KB

english, 2008

26

The ensemble folding kinetics of the FBP28 WW domain revealed by an all-atom Monte Carlo simulation in a knowledge-based potential

Jiabin Xu, Lei Huang, Eugene I. Shakhnovich

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 743 KB

english, 2011

27

Protein dynamics: From the native to the unfolded state and back again

Martin Karplus, Amedeo Caflisch, Andrej Săli, Eugene Shakhnovich

Journal:

Molecular Engineering

Year:

1995

Language:

english

File:

PDF, 1008 KB

english, 1995

28

Diversity Against Adversity: How Adaptive Immune System Evolves Potent Antibodies

Muyoung Heo, Konstantin B. Zeldovich, Eugene I. Shakhnovich

Journal:

Journal of Statistical Physics

Year:

2011

Language:

english

File:

PDF, 1.12 MB

english, 2011

29

Orientational ordering in sequence-disordered liquid crystalline polymers

Lorin Gutman, Eugene Shakhnovich

Journal:

Chemical Physics Letters

Year:

2000

Language:

english

File:

PDF, 214 KB

english, 2000

30

The well-tempered protein

Gabriel F Berriz, Eugene I Shakhnovich

Journal:

Current Opinion in Colloid & Interface Science

Year:

1999

Language:

english

File:

PDF, 2.40 MB

english, 1999

31

How does a protein fold?

S˘ali, Andrej, Shakhnovich, Eugene, Karplus, Martin

Journal:

Year:

1994

File:

PDF, 490 KB

1994

32

10.1038/5785

Shakhnovich, Eugene I.

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 150 KB

english, 1999

33

10.1038/74111

Shakhnovich, Eugene I., Li, Lewyn, Mirny, Leonid A.

Journal:

Natural Structural Biology

Year:

2000

Language:

english

File:

PDF, 333 KB

english, 2000

34

10.1038/74122

Shakhnovich, Eugene I., Li, Lewyn, Mirny, Leonid A.

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 252 KB

english, 2000

35

Protein folding: To knot or not to knot?

Shakhnovich, Eugene

Journal:

Nature Materials

Year:

2011

Language:

english

File:

PDF, 231 KB

english, 2011

36

Lessons from the design of a novel atomic potential for protein folding

William W. Chen, Eugene I. Shakhnovich

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 257 KB

english, 2005

37

Is there an en route folding intermediate for cold shock proteins?

Lei Huang, Eugene I. Shakhnovich

Journal:

Protein Science

Year:

2012

Language:

english

File:

PDF, 613 KB

english, 2012

38

Folding and binding: The conformational repertoire of proteins: folding, aggregation and structural recognition

Mikael Oliveberg, Eugene I Shakhnovich

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 64 KB

english, 2006

39

Improvisation in evolution of genes and genomes: whose structure is it anyway?

Boris E Shakhnovich, Eugene I Shakhnovich

Journal:

Current Opinion in Structural Biology

Year:

2008

Language:

english

File:

PDF, 324 KB

english, 2008

40

All-Atom Ab Initio Folding of a Diverse Set of Proteins

Jae Shick Yang, William W. Chen, Jeffrey Skolnick, Eugene I. Shakhnovich

Journal:

Year:

2007

Language:

english

File:

PDF, 1.25 MB

english, 2007

41

Protein folding: Think globally, (inter)act locally

Alan R Fersht, Eugene I Shakhnovich

Journal:

Current Biology

Year:

1998

Language:

english

File:

PDF, 278 KB

english, 1998

42

Universality and diversity of the protein folding scenarios:a comprehensive analysis with the aid of a lattice model

Leonid A Mirny, Victor Abkevich, Eugene I Shakhnovich

Journal:

Folding and Design

Year:

1996

Language:

english

File:

PDF, 948 KB

english, 1996

43

Improved design of stable and fast-folding model proteins

Victor I Abkevich, Alexander M Gutin, Eugene I Shakhnovich

Journal:

Folding and Design

Year:

1996

Language:

english

File:

PDF, 348 KB

english, 1996

44

Design of proteins with selected thermal properties

Michael P. Morrissey, Eugene I. Shakhnovich

Journal:

Folding and Design

Year:

1996

Language:

english

File:

PDF, 157 KB

english, 1996

45

Modelling protein folding: the beauty and power of simplicity

Eugene I Shakhnovich

Journal:

Folding and Design

Year:

1996

Language:

english

File:

PDF, 50 KB

english, 1996

46

A strategy for detecting the conservation of folding-nucleus residues in protein superfamilies

Stephen W. Michnick, Eugene Shakhnovich

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 396 KB

english, 1998

47

Protein design: a perspective from simple tractable models

Eugene I Shakhnovich

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 164 KB

english, 1998

48

Folding nucleus: specific of multiple? insights from lattice models and experiments

Eugene I. Shakhnovich

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 60 KB

english, 1998

49

A protein engineering analysis of the transition state for protein folding: simulation in the lattice model

Alexander M Gutin, Victor I Abkevich, Eugene I Shakhnovich

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 221 KB

english, 1998

50

Discrete molecular dynamics studies of the folding of a protein-like model

Nikolay V. Dokholyan, Sergey V. Buldyrev, H Eugene Stanley, Eugene I. Shakhnovich

Journal:

Folding and Design

Year:

1998

Language:

english

File:

PDF, 963 KB

english, 1998